PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G113200.1
Common NameB456_007G113200, LOC105802850
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 413aa    MW: 46976.2 Da    PI: 6.7504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G113200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14226277155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gorai.007G113200.1 226 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 277
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.83E-12224281No hitNo description
PROSITE profilePS5088816.126225276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-17225291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-11226277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-15226289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11231282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLVTERGTQK EKKNEFRAFT STTAKLFMER PQGPINPYFL GEHLEVECLE QGFISCERLK  60
LGEEEEEAHF SIPSFEEKMP FLQMLQSVES PQLFAFKEPN FQTLLRLQHM KKPWELNTNP  120
FIPEMETQVQ ALELESCVTH ETVLDLHSPV KSETKELKKS PPSSSCVEVL SSGSNQHQPK  180
SDNCSREPNL GSSSQKIFTK SPPITRERRK RKRTKAAKNK EEVESQRMTH IAVERNRRRQ  240
MNDYLNSLRS LMPPCYIQRG DQASIIAGAI DFVKELEQLL QSLEAQKRTR KVHESNNSMS  300
NPAMEIHQQE YENGSEDGHC GEEVKAESKT GAAEVEVNVI HNHVNLKIQC SRRAGQLIQA  360
IVTLETLRLT VLHLNITTSR ASVLYSFNLK MEDDSALRSA DEIAAAVHQI FS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212RRKRKR
2226237RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490186.10.0PREDICTED: transcription factor bHLH67-like isoform X1
TrEMBLA0A0D2P7C10.0A0A0D2P7C1_GOSRA; Uncharacterized protein
STRINGGorai.007G113200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-59bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]