PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G111800.1
Common NameB456_007G111800, LOC105802833
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 496aa    MW: 55315.4 Da    PI: 5.2553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G111800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-12314359454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI +L
  Gorai.007G111800.1 314 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYITDL 359
                         799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.2E-5226202IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.774310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-17311376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.30E-13313363No hitNo description
PfamPF000101.2E-9314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16314376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-15316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEVLIMSPSS SSSLVSFSQE TPSSTLQQRL QFVIQSQQDL WAYAIFWQTL NDDLGNLFLA  60
WGDGHLQCTK DASPRLSSSF HSERTKVMKG IQALIGDHHD VDMSMIDGTD ITDVEWLYMM  120
SMTRSFSAGE GIPGKALSTG SLVWLTGAHE LQFYNCERAR EAQMHGLETL VCIPTSCGVL  180
ELGSSEIIRE NWGLVQQVKS LFESDLIGLV PKQSTPPNLT PASIQFLDRN ISFADIGIIA  240
GVQEEDDASQ DIKTKQEHSN NQTKKDSSKL GQPSYVDSEH SDSDFPLLAM NNVEKRTPKK  300
RGRKPGLGRE TPLNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVSYITDLK  360
AKIDELESQL QRERKKVKVE MVDTMDNQST TTTTTSEEEQ QATRPSYSSP GTGSGIELEV  420
KIMVNDAMIR VHSENVNYPA ARLMGALRDL EFQVHHASMS SVNDLMLQDI VVRLPDGLRT  480
EEGLKSALLR RLDLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-35252028192Transcription factor MYC3
4rqw_B7e-35252028192Transcription factor MYC3
4rs9_A7e-35252028192Transcription factor MYC3
4yz6_A7e-35252028192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490160.10.0PREDICTED: transcription factor bHLH14-like
TrEMBLA0A0D2P7850.0A0A0D2P785_GOSRA; Uncharacterized protein
STRINGGorai.007G111800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.12e-67NACL-inducible gene 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]