PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G109300.1 | ||||||||
Common Name | B456_007G109300, LOC105802806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 617aa MW: 68106.4 Da PI: 6.7245 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.1e-13 | 447 | 493 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq Gorai.007G109300.1 447 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 493 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.2E-56 | 52 | 240 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 4.19E-18 | 442 | 506 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.047 | 443 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.46E-15 | 446 | 497 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.0E-18 | 447 | 506 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 447 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-16 | 449 | 498 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MKIELGMGGG AWNDEDKAMV AAVLGTRAFD YLISSSVSNE NLLMTVSSDE NLQNKLSDLV 60 DRPNASNFSW NYAIFWQISR SKSGDWALGW GDGCCREPKE GEESEATRIL NLRLEDDTQQ 120 RMRKRVLQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPQGEGG PGKCFLSGKH 180 VWLSDALKSG SDYCVRSFLT KSAGVQTIVL VPTDVGVVEL GSVRSVPESM ELLQSIRSSF 240 SSNSSLLRAK QMVAAAPVVN EKKHENPSHF SNLGIVERVE GIPKIFGQDL NNASHGHSNY 300 REKLAVRKME DRPTWAAYAN GVKLPFTRNQ NGIHAPGWPH VHGVKQGSGT EFYGSQTTAN 360 NLQELVNGAR EEFRLNQYQS PKPVQMQIDF SGATSRPSPA TTRPLSAESE HSDVEASCKE 420 DKPSPADERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS 480 LLGDAIAYIN ELQAKLKVME SEREKFGSTS RDSAGLDPNI NAENHIGAAN IDVQAVHDEV 540 VVRVSCPLDS HPASRVIQAF KDAHVNVLES KLVTADDTVF HTFVIKSQGS EQLTREKLIA 600 AFSCEPNSLQ PLSSLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-30 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 6e-30 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 6e-30 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 6e-30 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 6e-30 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 6e-30 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 6e-30 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 6e-30 | 441 | 503 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 428 | 436 | RRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490129.1 | 0.0 | PREDICTED: transcription factor bHLH13 | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A0D2P750 | 0.0 | A0A0D2P750_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G109300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3758 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G109300.1 |
Entrez Gene | 105802806 |
Publications ? help Back to Top | |||
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