PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G058200.1
Common NameB456_007G058200, LOC105802254
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25766.4 Da    PI: 10.0185
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G058200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.7e-261059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n+  rqvtfskRr+g++KKA+EL +LCdaev ++ifss+gklye++s
  Gorai.007G058200.1 10 RIDNSASRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSSGKLYEFAS 59
                        8***********************************************86 PP
2K-box82.97.4e-2876170498
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         +++ s+ +++ + +q+e+a Lk++++nLq ++R+l+Ge+L  L +++Lq+Le+qLe slk +R kK+++l+++ieel ++ + +++en +L
  Gorai.007G058200.1  76 HQQLSNPSSEVKFWQREAAILKQQLQNLQDNHRQLMGEQLYGLRVEDLQNLENQLEMSLKGVRMKKERILTNEIEELNRRGNLIHQENVEL 166
                         4555578899********************************************************************************* PP

               K-box  95 rkkl 98 
                          kk+
  Gorai.007G058200.1 167 FKKV 170
                         9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.342161IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-38160IPR002100Transcription factor, MADS-box
CDDcd002652.57E-42278No hitNo description
SuperFamilySSF554551.57E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2583170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.70786176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSASRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS SGKLYEFAST  60
SMKSVIERYN TLKEEHQQLS NPSSEVKFWQ REAAILKQQL QNLQDNHRQL MGEQLYGLRV  120
EDLQNLENQL EMSLKGVRMK KERILTNEIE ELNRRGNLIH QENVELFKKV NLIRKENMEL  180
HKKVYGTRYE NGNAVSSYVF DSGEGSNVPI HLQLSQPERY KD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-23181181MEF2 CHIMERA
6byy_B4e-23181181MEF2 CHIMERA
6byy_C4e-23181181MEF2 CHIMERA
6byy_D4e-23181181MEF2 CHIMERA
6bz1_A4e-23181181MEF2 CHIMERA
6bz1_B4e-23181181MEF2 CHIMERA
6bz1_C4e-23181181MEF2 CHIMERA
6bz1_D4e-23181181MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556330.0KC155633.1 Gossypium hirsutum MADS box protein MADS38 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489240.11e-162PREDICTED: MADS-box transcription factor 23 isoform X1
RefseqXP_012489241.11e-162PREDICTED: MADS-box transcription factor 23 isoform X1
SwissprotQ6EP491e-101MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0D2T9F21e-160A0A0D2T9F2_GOSRA; Uncharacterized protein
STRINGGorai.007G058200.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-103AGAMOUS-like 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]