PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G053900.1
Common NameB456_007G053900, LOC105802216
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 296aa    MW: 33430.3 Da    PI: 8.4329
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G053900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.76.7e-37101012102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+ ++++isw+eng+sfvv++  +fak++LpkyFkh+nf+SFvRQLn+YgF+kv +++         weF++++Fk+g+ke
  Gorai.007G053900.1  10 FLTKTYKLVDDPITDDVISWNENGTSFVVWNIADFAKDLLPKYFKHDNFSSFVRQLNTYGFRKVVQDK---------WEFANENFKRGQKE 91 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++++r+k 
  Gorai.007G053900.1  92 LLSEMRRRKA 101
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.7E-60699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.8E-38799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.98E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTQRCVPAPF LTKTYKLVDD PITDDVISWN ENGTSFVVWN IADFAKDLLP KYFKHDNFSS  60
FVRQLNTYGF RKVVQDKWEF ANENFKRGQK ELLSEMRRRK AVTPSPANGK TPAAVPSSPT  120
KSGEDQGSTS TSSLDSKNPG SVETKQETMN VFSNLSNENE KLKKHNELLS SELAQAKKQC  180
DELVAFLTER VKVSPDQFNR IMRQGSYDST RDDDDHGRRY GAGDPDDHDH DDDDENGSQD  240
WNGSLKLFGV WLKGAGKKRL PKEKKIVYGE PYAKQMKTVD FNHAGMRMKS GKVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2669926129Heat shock factor protein 1
5d5v_B1e-2669926129Heat shock factor protein 1
5d5v_D1e-2669926129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674030.0KR067403.1 Gossypium hirsutum HSF22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489174.10.0PREDICTED: heat shock factor protein HSF24-like
RefseqXP_012489175.10.0PREDICTED: heat shock factor protein HSF24-like
SwissprotP223351e-106HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0D2QLX60.0A0A0D2QLX6_GOSRA; Uncharacterized protein
STRINGGorai.007G053900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.18e-89heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]