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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G043900.1 | ||||||||
Common Name | B456_007G043900, LOC105802121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 27314.2 Da PI: 9.9281 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.8 | 1.6e-47 | 12 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF+Pt+eelv +yLk k+ + +l++ ++i++++i++++PwdLp ++ +e yfFs ++ ky+tg+r nrat+sgyWkatg+dk+ Gorai.007G043900.1 12 LPPGFRFQPTEEELVFQYLKCKAFSFPLPA-SIIPDLNICNFDPWDLPGEL---GEERYFFSMKEAKYKTGNRINRATASGYWKATGSDKK 98 79****************************.89***************553...5799********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+++++ g++ktLvf+ g+ p+g +tdW+mheyrl Gorai.007G043900.1 99 IISRRNQVAGMRKTLVFHMGKPPHGLRTDWIMHEYRL 135 ***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-54 | 8 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.411 | 12 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-24 | 13 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MNSLRLNGLR KLPPGFRFQP TEEELVFQYL KCKAFSFPLP ASIIPDLNIC NFDPWDLPGE 60 LGEERYFFSM KEAKYKTGNR INRATASGYW KATGSDKKII SRRNQVAGMR KTLVFHMGKP 120 PHGLRTDWIM HEYRLVNVPN NDFNLANNPM MQNYLNHEME KWVLCHVFLK KTSKKSSEEE 180 IMQSFCNKNR NKALGHRMEP KVYNFMREKD AEPSSSSSAS SRSDITEVSS SACSRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-44 | 12 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-44 | 12 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-44 | 12 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-44 | 12 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-44 | 12 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-44 | 12 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-44 | 12 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-44 | 12 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-44 | 12 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-44 | 12 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-44 | 12 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-44 | 12 | 175 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 7e-44 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 7e-44 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489037.1 | 1e-179 | PREDICTED: NAC transcription factor 25-like | ||||
Swissprot | Q9FY93 | 4e-68 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A0D2QLE9 | 1e-177 | A0A0D2QLE9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G043900.1 | 1e-178 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22074 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-68 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G043900.1 |
Entrez Gene | 105802121 |
Publications ? help Back to Top | |||
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