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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.007G043500.1 |
Common Name | B456_007G043500 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
SBP |
Protein Properties |
Length: 424aa MW: 47203.5 Da PI: 8.9716 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.007G043500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 128.1 | 3.3e-40 | 143 | 220 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+C v++C++dls++++yhrrhkvCe hsk+++v+++gl+qrfCqqCsrfh+l+efD++krsCr rL++hn+rrrk+q+
Gorai.007G043500.1 143 VCLVDECNTDLSNCRDYHRRHKVCELHSKTAEVMINGLKQRFCQQCSRFHSLEEFDNGKRSCRARLDRHNRRRRKPQP 220
6**************************************************************************987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 424 aa
Download sequence Send
to blast |
MESLSVIQWL EKRKQLFLFV CNCKSFILGE NSRKKLNKQG VEVKGFFILM DWNLKATSGD 60 FTEFVQETVS NADTDIINGN ESNSYKLLNS IGDFRVDLKL GQVGNSGELP SNKWKEPRVL 120 KMESSSSSSK KFRPTNIGTH PVVCLVDECN TDLSNCRDYH RRHKVCELHS KTAEVMINGL 180 KQRFCQQCSR FHSLEEFDNG KRSCRARLDR HNRRRRKPQP DPLSHSRSYF SNYQGSQMLP 240 FSGLQVYPST SVVKTTWPES RYLNLKQPPA KQNLLLGSSS SNYREGKQQC SFLQGKNQTP 300 VKASICQPVL GGVAPFSEGN GGCQSMLCDR LTTQVRDSDC ALSLLSSPLL HTSGIGLSNM 360 VQPQSFPLVQ SLGPSLQDHI IEPMGSVIAN GRETTVHGSG MFHMGSGGSS ASEPPENLGF 420 HWQ*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 200 | 217 | KRSCRARLDRHNRRRRKP |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ622326 | 0.0 | KJ622326.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL18) mRNA, complete cds. |