 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Gorai.007G043400.1 |
Common Name | B456_007G043400, LOC105802115 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
Family |
MIKC_MADS |
Protein Properties |
Length: 219aa MW: 25445.1 Da PI: 10.4684 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.007G043400.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 91.8 | 3.3e-29 | 18 | 68 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien +nrqvtfskRrng+lKKA+ELS+LCdaeva++ifss+gk+y ++s
Gorai.007G043400.1 18 KRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSSSGKVYQFAS 68
79***********************************************86 PP
|
2 | K-box | 66.7 | 8e-23 | 94 | 181 | 13 | 100 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+ e ++ e++ Lk+ i++L+ ++hl Ged+ L +++L+qLe+qL+ +++++Rs+K +++ ++ l+++ k+lqeen +L+k+l+e
Gorai.007G043400.1 94 TREFWRSEIDELKRSINTLEARLKHLSGEDILALGMRDLKQLERQLKIGVERVRSRKRRIVSDHATLLKRRHKQLQEENSRLHKRLKE 181
5689********************************************************************************9986 PP
|
Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 2.7E-41 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.109 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.16E-39 | 11 | 79 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-32 | 11 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 12 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.8E-21 | 94 | 179 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.86 | 95 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MDDSWVLKEM GRGKVELKRI ENPTNRQVTF SKRRNGLLKK AFELSILCDA EVALLIFSSS 60 GKVYQFASHD MDRTVAKYRR EVGLPDSSNP QFRTREFWRS EIDELKRSIN TLEARLKHLS 120 GEDILALGMR DLKQLERQLK IGVERVRSRK RRIVSDHATL LKRRHKQLQE ENSRLHKRLK 180 ELQDGNISSG LVGENACTMF HQRIVHDEDF HNETGLPL*
|