PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G040600.4
Common NameB456_007G040600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 492aa    MW: 54023.1 Da    PI: 9.3623
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G040600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH542.9e-17191240255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f+ Lr+++P++    ++K +Ka+ L +++eYI+ Lq
  Gorai.007G040600.4 191 RSKHSATEQRRRSKINNRFQMLRDIIPNS----DQKRDKASFLLEVIEYIQFLQ 240
                         889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-23186255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-18188257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.749189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-14191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-15191244No hitNo description
SMARTSM003533.1E-13195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MPTPPFVEHI LPGGIGTYSI SHVSYFNPRV PKSEGAVFTV AEGSSTERND ENSNCSSYTG  60
SGFTLWEETA GKKGKTGKEN AGETPFVRDA AGKVGHWATS SLEKGTQSST NNHPKSYSCL  120
SSSQPSSKQQ KRQSFMEMIK SAKGSSQDDD FEEDEDFVLK KESSTTTHNI GELRVKVDGK  180
SVPDQKANTP RSKHSATEQR RRSKINNRFQ MLRDIIPNSD QKRDKASFLL EVIEYIQFLQ  240
ERVHKYEGTY QGWSHVPSKL IPWRSNQRPT ENYADQSRAI NGVSPSVVFP TKLDDGNINI  300
TPTIRESAEN PIEPNKSRAT TFRAMDLTPG MMNKTMPFPV SLQPNFFNTA QNTVPATQIP  360
PRLPSDAENN ASQPQPVQCH TGSCTANGAL PSEKLKEQEL TIEGGKINIS SLYSQRLLNT  420
LTQALQTSGL DLSQASISVQ IELGKQSSNR PTAPTSTLKD TTAAPSTNQG KTRPRVGRGE  480
DSDQPLKKLK T*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488985.10.0PREDICTED: transcription factor BIM1
RefseqXP_012488986.10.0PREDICTED: transcription factor BIM1
RefseqXP_012488987.10.0PREDICTED: transcription factor BIM1
TrEMBLA0A0D2SDR80.0A0A0D2SDR8_GOSRA; Uncharacterized protein
STRINGGorai.007G040600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.48e-92bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]