PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G040600.2
Common NameB456_007G040600, LOC105802087
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 562aa    MW: 61831.7 Da    PI: 9.1499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G040600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.83.5e-17261310255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f+ Lr+++P++    ++K +Ka+ L +++eYI+ Lq
  Gorai.007G040600.2 261 RSKHSATEQRRRSKINNRFQMLRDIIPNS----DQKRDKASFLLEVIEYIQFLQ 310
                         889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-23256325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-18258327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.749259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-14261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-15261314No hitNo description
SMARTSM003533.1E-13265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MELPQSRPFG AEGRKPTHDF LSLYSHSSVQ QDPRPPSQGG YLKTRDFLQL EQQGNPSAKK  60
EISVEVATVE MPTPPFVEHI LPGGIGTYSI SHVSYFNPRV PKSEGAVFTV AEGSSTERND  120
ENSNCSSYTG SGFTLWEETA GKKGKTGKEN AGETPFVRDA AGKVGHWATS SLEKGTQSST  180
NNHPKSYSCL SSSQPSSKQQ KRQSFMEMIK SAKGSSQDDD FEEDEDFVLK KESSTTTHNI  240
GELRVKVDGK SVPDQKANTP RSKHSATEQR RRSKINNRFQ MLRDIIPNSD QKRDKASFLL  300
EVIEYIQFLQ ERVHKYEGTY QGWSHVPSKL IPWRSNQRPT ENYADQSRAI NGVSPSVVFP  360
TKLDDGNINI TPTIRESAEN PIEPNKSRAT TFRAMDLTPG MMNKTMPFPV SLQPNFFNTA  420
QNTVPATQIP PRLPSDAENN ASQPQPVQCH TGSCTANGAL PSEKLKEQEL TIEGGKINIS  480
SLYSQRLLNT LTQALQTSGL DLSQASISVQ IELGKQSSNR PTAPTSTLKD TTAAPSTNQG  540
KTRPRVGRGE DSDQPLKKLK T*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488985.10.0PREDICTED: transcription factor BIM1
RefseqXP_012488986.10.0PREDICTED: transcription factor BIM1
RefseqXP_012488987.10.0PREDICTED: transcription factor BIM1
SwissprotQ9LEZ31e-120BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A0D2S6L00.0A0A0D2S6L0_GOSRA; Uncharacterized protein
STRINGGorai.007G040600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-110bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]