PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G034400.3

Common Name

B456_007G034400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 200aa MW: 21121.4 Da PI: 5.8816

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G034400.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	7.9e-07	166	192	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR+ri +++ L++l+P + Gorai.007G034400.3 166 SHSLAERARRERISERMKILQDLVPGC 192 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-8	160	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.41E-5	160	194	No hit	No description
PROSITE profile	PS50888	11.331	162	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-8	165	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-4	166	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDPPLINESS FSAANPSAYS LAEIWPFPIN PGSDPTAVTG GGLGLRIGNL GGFGETSGLR 60 DGSMEESTVT EQSVGCGGGR KRKELSSEDE SSKIVSTTTS ANELNDSDGK RMKTPVSKNG 120 NTGSKEAEVE ASSADGSKPD KNSKPAEPPK QDYIHVRARR GQATDSHSLA ERARRERISE 180 RMKILQDLVP GCNKVFIVV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2765	0.0	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY779337	0.0	AY779337.1 Gossypium hirsutum bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488874.1	1e-140	PREDICTED: transcription factor bHLH79 isoform X2
Swissprot	Q9LV17	1e-51	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A0D2S5Y8	1e-142	A0A0D2S5Y8_GOSRA; Uncharacterized protein
STRING	Gorai.007G034400.1	1e-139	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	4e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G034400.3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]