PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G034400.1
Common NameB456_007G034400, LOC105802020
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 286aa    MW: 30676.1 Da    PI: 5.453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G034400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.5e-11166213455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Gorai.007G034400.1 166 SHSLAERARRERISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 213
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.78E-11160217No hitNo description
SuperFamilySSF474594.45E-18160231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-18162231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.815162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDPPLINESS FSAANPSAYS LAEIWPFPIN PGSDPTAVTG GGLGLRIGNL GGFGETSGLR  60
DGSMEESTVT EQSVGCGGGR KRKELSSEDE SSKIVSTTTS ANELNDSDGK RMKTPVSKNG  120
NTGSKEAEVE ASSADGSKPD KNSKPAEPPK QDYIHVRARR GQATDSHSLA ERARRERISE  180
RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQQQVEFLS MKLEAVNSRI NVNPSFEGFH  240
SKDLGLQPID GAGMIFGSQT AREYAQGLHP EWLQMHVGGN FERAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.27650.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7793370.0AY779337.1 Gossypium hirsutum bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488873.10.0PREDICTED: transcription factor bHLH79 isoform X1
SwissprotQ9LV173e-89BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A0D2P2440.0A0A0D2P244_GOSRA; Uncharacterized protein
STRINGGorai.007G034400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.12e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]