PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 297aa MW: 32971.4 Da PI: 9.3239

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G026200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.6	8.8e-20	111	159	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p + rkr++lg++ tae Aa a+++a+ kl+g Gorai.007G026200.1 111 YRGVRQRR-WGKWVAEIRLPQN---RKRVWLGTYETAETAALAYDRAAYKLRG 159 9**998.******954...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.4E-36	110	173	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-23	110	167	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.8E-31	110	168	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.288	110	167	IPR001471	AP2/ERF domain
Pfam	PF00847	4.5E-14	111	159	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-10	111	122	IPR001471	AP2/ERF domain
CDD	cd00018	1.37E-31	111	169	No hit	No description
PRINTS	PR00367	1.8E-10	133	149	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MQKTDHVCGF NDGANIGSSL SQLILSGGSN TIDSIFSRCA PSSTMAGVYE PLGSSVYHRQ 60 RDLLEKFSHE KKENASFSFK CLTNPIQNSQ NHASTTAAAK YLSSPQKKNL YRGVRQRRWG 120 KWVAEIRLPQ NRKRVWLGTY ETAETAALAY DRAAYKLRGD YARLNFPNLK DPSKFGFVDC 180 AQLNALKNMV DAKIQAICQK MKTERTKKKA KKGNFDRPGC SSSSSLSPMV FSDDLSKELI 240 SPTVSGDGFL RAENSSSSVS NDYPMMVVAE ELPFEDELLA RMPSFDAELL WDCLAK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-21	111	167	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488751.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF061-like
Swissprot	Q9C7W2	1e-57	ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBL	A0A0D2SCX0	0.0	A0A0D2SCX0_GOSRA; Uncharacterized protein
STRING	Gorai.007G026200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4174	25	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64380.1	7e-43	ERF family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G026200.1
Entrez Gene	105801937

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]