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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G017500.3 | ||||||||
Common Name | B456_007G017500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 44603.6 Da PI: 4.8829 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.9 | 2e-53 | 9 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp G+rF+Ptdeel+++yL++kv+gk+ ++ vi+evd++k+ePwdLp+ +vk+++ ew+fF++ d+ky++g+r nrat++gyWkatgkd Gorai.007G017500.3 9 LPIGIRFRPTDEELIDFYLRAKVNGKRKDEIGVIREVDVCKCEPWDLPHlsAVKGRDPEWFFFCPLDRKYPNGNRLNRATEAGYWKATGKD 99 699************************999899***************4347788888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s ++ l+g+kktLvfy+grapkg++t+Wvmheyr Gorai.007G017500.3 100 RKIKS-GSCLIGMKKTLVFYTGRAPKGKRTNWVMHEYRT 137 *****.99*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-60 | 4 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.578 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-27 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MAVISLNSLP IGIRFRPTDE ELIDFYLRAK VNGKRKDEIG VIREVDVCKC EPWDLPHLSA 60 VKGRDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSCLIG MKKTLVFYTG 120 RAPKGKRTNW VMHEYRTTLD ELDGTKPGQN PFVICRLFKK QDVTIEDINA DDVDPGASSH 180 TEEVQSEFDG PSVEGGAGKV PDETRPVGLC NEAVAPIFDC NNGGFNACEL EEMAPAQVDL 240 LGEALVQFCD PMMEPLDWKL FSPLHSQIEA EGAPWMFDHV GNSFGGVKFE HGTNENDAEF 300 MNSILNNLDD YYSDDSSSRR NSVIETETPK SMAFGTNGGL YCKPDAEPAQ VLVSSRTKLV 360 TYLFTVSIFI EIMKCLIELL FKIHTAWDRN CQRRSIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-41 | 8 | 161 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-41 | 8 | 161 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-41 | 8 | 161 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-41 | 8 | 161 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-41 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-41 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-41 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-41 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-41 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-41 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-41 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-41 | 8 | 161 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-41 | 8 | 161 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-41 | 8 | 161 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.450 | 0.0 | seedling |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48795729 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847226 | 0.0 | KC847226.1 Gossypium hirsutum NAC domain protein NAC49 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488635.1 | 0.0 | PREDICTED: NAC domain-containing protein 62-like | ||||
Swissprot | Q9LKG8 | 5e-90 | NAC91_ARATH; NAC domain-containing protein 91 | ||||
TrEMBL | A0A0D2QK10 | 0.0 | A0A0D2QK10_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G017500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 7e-91 | TCV-interacting protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G017500.3 |
Publications ? help Back to Top | |||
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