PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 25547.3 Da PI: 5.6474

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G016800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.5e-19	36	89	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ft++q++ Le+ Fe++ ++ +++ + A++lgL+ rqV++WFqNrRa+ k Gorai.007G016800.1 36 NKRRFTDDQIRLLESIFESETKLEPKKKLQVARELGLQPRQVSIWFQNRRARLK 89 5679************************************************98 PP
2	HD-ZIP_I/II	115.7	2.8e-37	36	124	2	90
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +krr++++q++lLE+ Fe+e+kLep++K ++areLglqprqv +WFqnrRAR k+kq+Ekdy +L+++yd+l+++ e+L++e++ L ++ Gorai.007G016800.1 36 NKRRFTDDQIRLLESIFESETKLEPKKKLQVARELGLQPRQVSIWFQNRRARLKSKQMEKDYVTLRDNYDKLVSRFEMLKEEKQCLISQ 124 79**********************************************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.3E-18	19	92	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	31	91	IPR001356	Homeobox domain
SMART	SM00389	7.8E-17	34	95	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-16	36	89	IPR001356	Homeobox domain
CDD	cd00086	2.36E-14	37	92	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-18	37	97	IPR009057	Homeodomain-like
PRINTS	PR00031	1.6E-5	62	71	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	66	89	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.6E-5	71	87	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.9E-12	91	132	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
METRDHHHPS SNELILQQYS QAPPPGKNNS NNSSSNKRRF TDDQIRLLES IFESETKLEP 60 KKKLQVAREL GLQPRQVSIW FQNRRARLKS KQMEKDYVTL RDNYDKLVSR FEMLKEEKQC 120 LISQKEKLSE MLAESETTGV NNKVSKEGST EHEAEPGSSF KQEDDGVLGL ETEKGHREIE 180 DAVKHGDELM SMDEYRDYDD QFDHLCSRWQ HWLNFWT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	91	RRARLKSKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX584309	1e-151	JX584309.1 Gossypium hirsutum clone NBRI_GE17582 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488622.1	1e-162	PREDICTED: homeobox-leucine zipper protein ATHB-7-like
TrEMBL	A0A0D2QJS0	1e-160	A0A0D2QJS0_GOSRA; Uncharacterized protein
STRING	Gorai.007G016800.1	1e-161	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17513	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	5e-40	homeobox 7

Link Out ? help Back to Top
Phytozome	Gorai.007G016800.1
Entrez Gene	105801847

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]