PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G012300.1
Common NameB456_007G012300, LOC105801798
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 626aa    MW: 67522 Da    PI: 6.3916
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G012300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.91.8e-1102576252374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++++l++A a+s+g++  ++++L+rl + a+++g++ qRl  +++ AL++r+++    + +  p+ e     s+e++a+++l++++sP++k
  Gorai.007G012300.1 257 KQTILDAAAAISEGKNDVVNEILTRLAQAANSKGSSEQRLMECMLSALKSRVNS----VENPPPVAEL---FSKEHAASTQLLYDLSPCFK 340
                         57899************************************************9....4443344333...499***************** PP

                GRAS  93 fshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         +++l+aNqaIl+a+  +   ++ H++Dfd + G+Q+++Ll+aL++R +g+p +++iT++++  +g  e+l+++g+rL++fAe+ gv+++fn
  Gorai.007G012300.1 341 LGFLAANQAILDATLDKpscNKFHVVDFDFGLGGQYMNLLHALSERGNGKPaTVKITAIAD--NGGDERLKTVGDRLSQFAESYGVSLKFN 429
                         *************9988778999***********************977666*********..77************************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         v+   +l+dl+ ++L ++++E laVn++++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+++n+++F+ r+ ea+ yy alfds
  Gorai.007G012300.1 430 VISGLKLSDLSRDSLGIEQDEPLAVNFAFKLYRMPDESVSIENPRDELLRRVKGLAPRVVTLVEQEMNTNTAPFASRVGEACGYYGALFDS 520
                         *9888************************************************************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslv 359
                         +e+++ r++ +r+k+E+  l r+i n vaceg++r+er+e ++kWr+r+++aGF+  pls+++a+++++ l+  +  + g++v+ee+g + 
  Gorai.007G012300.1 521 VESTVLRDNPDRAKLEEG-LLRKIANSVACEGRDRVERCEVFGKWRARMSMAGFELKPLSQTVAETMRAKLNSGNrvNPGFTVKEENGGVN 610
                         ******************.889***********************************************9998777789************ PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         +gW +r+L+++SaWr
  Gorai.007G012300.1 611 FGWLGRTLTVASAWR 625
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.163230603IPR005202Transcription factor GRAS
PfamPF035146.3E-108257625IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MASGFSGGGP DFYGGLAGRS VVNTGTINNN QTTAPYRTQV PGMFMDTSSQ IVNRATPGFI  60
GKRTLADFQT QQALNNNPGR LFLRSVKPRT YQHTSPISPL SPIDLPSNLS PDVMSNFSSP  120
SSCMSQRYGL PLLQQLRPQQ VPLGINTGAT IQAVSTGLSG GPYMNQVSTR VVQPHDPEKK  180
MMNQLQDLEK QLLDDDNDEG DAVSVITNIN SEWSETIQNL IGSTGSPNNP IAPSPTSTTS  240
SCSSTSSTAS PASPCSKQTI LDAAAAISEG KNDVVNEILT RLAQAANSKG SSEQRLMECM  300
LSALKSRVNS VENPPPVAEL FSKEHAASTQ LLYDLSPCFK LGFLAANQAI LDATLDKPSC  360
NKFHVVDFDF GLGGQYMNLL HALSERGNGK PATVKITAIA DNGGDERLKT VGDRLSQFAE  420
SYGVSLKFNV ISGLKLSDLS RDSLGIEQDE PLAVNFAFKL YRMPDESVSI ENPRDELLRR  480
VKGLAPRVVT LVEQEMNTNT APFASRVGEA CGYYGALFDS VESTVLRDNP DRAKLEEGLL  540
RKIANSVACE GRDRVERCEV FGKWRARMSM AGFELKPLSQ TVAETMRAKL NSGNRVNPGF  600
TVKEENGGVN FGWLGRTLTV ASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4125562511375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488542.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0D2QJG30.0A0A0D2QJG3_GOSRA; Uncharacterized protein
STRINGGorai.007G012300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-178SCARECROW-like 8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]