PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G010900.1
Common NameB456_007G010900, LOC105801780
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 327aa    MW: 36276.8 Da    PI: 6.1681
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G010900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35271182102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isw+++g++f+v+++  fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+k+
  Gorai.007G010900.1  27 FLTKTYQLVDDHTIDDVISWNDDGSTFIVWNPMVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDYFRRGEKR 108
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Gorai.007G010900.1 109 LLCEIQRRKI 118
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3717111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-5523116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-3424116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAPPPVEQNG DATTGTAESQ RSIPTPFLTK TYQLVDDHTI DDVISWNDDG STFIVWNPMV  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSND YFRRGEKRLL CEIQRRKISS  120
PTAAAVTVAP VTVAAIPMAK PIISPSNSGD EQSPVISSAS SPSRLNQAGT VMAELMKENE  180
KLRKENVQLN KQLSEMKSLC NNIFSLMSNY ASSQSENISP VHKPLDFLPA KRLSWGESVE  240
EETSPRLFGV PIGGAAKRAR EEGEGVGTEA ATAADETQLQ LQQPGGSEII KLEPLDCQNR  300
GRDDDRGIQD APWLRQVHRA NQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-222711629129Heat shock factor protein 1
5d5v_B3e-222711629129Heat shock factor protein 1
5d5v_D3e-222711629129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.9520.0flower|seedling| flowering
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486230.0KJ748623.1 Gossypium hirsutum HSF20 (HSF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488516.10.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW41e-104HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0D2P1090.0A0A0D2P109_GOSRA; Uncharacterized protein
STRINGGorai.007G010900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-97heat shock transcription factor B2A
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]