PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G269200.2

Common Name

B456_006G269200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 447aa MW: 48640.1 Da PI: 9.897

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G269200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.9	1.6e-17	190	239	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr ++P++ ++K +Ka+ L +++eYI+ Lq Gorai.006G269200.2 190 RSKHSATEQRRRSKINDRFQRLRGIIPNS----DQKKDKASFLLEVIEYIQFLQ 239 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.1E-24	185	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.02E-18	187	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.742	188	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-14	190	243	No hit	No description
Pfam	PF00010	4.7E-15	190	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-13	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MAEKPLPPPP PAPPPRSAEH VLPGGIGTYS ISHISTRAEG ALFTVARRSI SERNDETSNS 60 SSYTGSGFTL WEESAAKKGK TGKENTGETL AVREAAGKER QWATSSLERP SQSSSTNNHR 120 NSFSSLSSSR PSSKQKSFME MMKSAQYSDF EEDEDFNLKK ESSTTTRSKG ELRVKVDGKS 180 AANQKANTSR SKHSATEQRR RSKINDRFQR LRGIIPNSDQ KKDKASFLLE VIEYIQFLQE 240 KVHKHEGAYQ GWNHEPSKLM PWRNNETPTE NHADQSRAIN SMSTPSALVF SVAPNIPGTA 300 MNPVDSDMST ATTLRPVDLG PAMMNKTMPF AMSPQTNSIT SAQSTPLLPS DAETNGALPI 360 KKLKEQELTV EGGTISISSV YSQGLLNTLT QALQASGVDL SHASLSVQIE LGKQSSTGYT 420 APTSTLKGQG DSIHNSRGNT FKRWVC*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MAEKPLPPPP PAPPPRSAEH VLPGGIGTYS ISHISTRAEG ALFTVARRSI SERNDETSNS  60
SSYTGSGFTL WEESAAKKGK TGKENTGETL AVREAAGKER QWATSSLERP SQSSSTNNHR  120
NSFSSLSSSR PSSKQKSFME MMKSAQYSDF EEDEDFNLKK ESSTTTRSKG ELRVKVDGKS  180
AANQKANTSR SKHSATEQRR RSKINDRFQR LRGIIPNSDQ KKDKASFLLE VIEYIQFLQE  240
KVHKHEGAYQ GWNHEPSKLM PWRNNETPTE NHADQSRAIN SMSTPSALVF SVAPNIPGTA  300
MNPVDSDMST ATTLRPVDLG PAMMNKTMPF AMSPQTNSIT SAQSTPLLPS DAETNGALPI  360
KKLKEQELTV EGGTISISSV YSQGLLNTLT QALQASGVDL SHASLSVQIE LGKQSSTGYT  420
APTSTLKGQG DSIHNSRGNT FKRWVC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487600.1	0.0	PREDICTED: transcription factor BIM1-like isoform X2
TrEMBL	A0A0D2QHH7	0.0	A0A0D2QHH7_GOSRA; Uncharacterized protein
STRING	Gorai.006G269200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.5	3e-79	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G269200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]