PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 133aa MW: 14678.1 Da PI: 9.2838

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G250000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.9	2.9e-19	16	68	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +g + AeIrdp++ + +r++lg+f taeeAa+a+++a+ +++ge Gorai.006G250000.1 16 TRYRGVRSRP-WGTFGAEIRDPNQ--QGARVWLGTFNTAEEAARAYDRAAYSMRGE 68 68***999.******944..44************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.5E-13	16	68	IPR001471	AP2/ERF domain
CDD	cd00018	5.23E-17	16	76	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.0E-31	17	77	IPR001471	AP2/ERF domain
SMART	SM00380	2.6E-31	17	81	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.143	17	75	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-22	17	77	IPR016177	DNA-binding domain
PRINTS	PR00367	1.2E-10	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-10	41	57	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MEGNYKGKEG SGGGTTRYRG VRSRPWGTFG AEIRDPNQQG ARVWLGTFNT AEEAARAYDR 60 AAYSMRGEFA ILNFPDEYPM GANAYRRSSS TGSSSSSSSA RERGKQVFEI EYVDDNLLEE 120 LLGIDEKKKK KT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-36	6	117	3	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487286.1	2e-92	PREDICTED: ethylene-responsive transcription factor ERF096-like
Refseq	XP_016715919.1	2e-92	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	2e-38	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A0D2S952	4e-91	A0A0D2S952_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8LRU1	4e-91	A0A1U8LRU1_GOSHI; ethylene-responsive transcription factor ERF096-like
TrEMBL	A0A2P5RFT2	4e-91	A0A2P5RFT2_GOSBA; Uncharacterized protein
STRING	Gorai.006G250000.1	7e-92	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	4e-28	ERF family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G250000.1
Entrez Gene	105800615

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]