PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G225700.1

Common Name

B456_006G225700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 388aa MW: 43771.4 Da PI: 10.0086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G225700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7.2e-09	194	240	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gorai.006G225700.1 194 HSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 240 999********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.51E-17	187	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.154	189	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-16	192	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-6	194	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.31E-9	194	244	No hit	No description
SMART	SM00353	1.6E-10	195	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MVSSSSAISN AETVLPGYEH NMVIRKLIGR LGNDYNYSSF TSSQPLIKSN NANTPLNIIP 60 KLNLPFSSDP GFSERAPRFS SFNGELGFNR NEFQANIPDS KRGSLLVSEN IPRQNNVNSR 120 KRKSIPSGKA EETPSMAAAD SKIVAGAKRS KKDRADEEHH GNGEKHNKVK SKAAMAPMEY 180 VHVRARRGQA TDGHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ 240 RQVEFLSMKF ATLNPRMDIN MESIVPMDMF RCCGSLPSTM FSIDSSASAF GFGYEHQQRV 300 PMHNGEYDNA ETRFFENSPN SGLRKTRDPI DDLTDANSRV GLFWDDDDLH SIVQMGFGQN 360 QPQSYQGRLW EVKRRWKMWR RTKQCKL*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MVSSSSAISN AETVLPGYEH NMVIRKLIGR LGNDYNYSSF TSSQPLIKSN NANTPLNIIP  60
KLNLPFSSDP GFSERAPRFS SFNGELGFNR NEFQANIPDS KRGSLLVSEN IPRQNNVNSR  120
KRKSIPSGKA EETPSMAAAD SKIVAGAKRS KKDRADEEHH GNGEKHNKVK SKAAMAPMEY  180
VHVRARRGQA TDGHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ  240
RQVEFLSMKF ATLNPRMDIN MESIVPMDMF RCCGSLPSTM FSIDSSASAF GFGYEHQQRV  300
PMHNGEYDNA ETRFFENSPN SGLRKTRDPI DDLTDANSRV GLFWDDDDLH SIVQMGFGQN  360
QPQSYQGRLW EVKRRWKMWR RTKQCKL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	123	SRKRKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486967.1	0.0	PREDICTED: transcription factor bHLH77-like
TrEMBL	A0A0D2S0W8	0.0	A0A0D2S0W8_GOSRA; Uncharacterized protein
STRING	Gorai.006G225700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24423	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	2e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G225700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]