PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G217200.1

Common Name

B456_006G217200, LOC105800316

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 296aa MW: 33221.2 Da PI: 8.8096

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G217200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	8.5e-14	100	151	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P++ + ++ + a+i+ A+e++k+L+ Gorai.006G217200.1 100 QRMTHIAVERNRRKQMNEHLTVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 151 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.31E-13	98	155	No hit	No description
SuperFamily	SSF47459	9.03E-17	98	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.142	99	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-11	100	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-14	100	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-10	105	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MALETLSSNE LLNFIIYDTI FATPCSSHHH ESLVTDFSME NSFSSLEQAS NSGNALSCLP 60 MVTPKCRSKG MERSNLAVQG RKKRRRKPRV CKNKAEAETQ RMTHIAVERN RRKQMNEHLT 120 VLRSLMPESY VQRGDQASIV GGAIEFVKEL EHLLQTLEAQ KLRVETNMSL LSSSSSPPFA 180 QFFTHPQYTW SQIPNKHTPK TKASIAEIEV TLIQTHANLR ILTRKVHKQL PKLVAALHSL 240 YLSILHLNVT SMDTLVLYSI SVKVEEGCQL NSVDDIAGAV HNMLRIIEEE ATTLC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	86	RKKRRRK
2	80	87	RKKRRRKP
3	81	86	KKRRRK
4	100	111	RMTHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486809.1	0.0	PREDICTED: transcription factor bHLH71-like
Swissprot	Q9C7T4	2e-72	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0D2S0G4	0.0	A0A0D2S0G4_GOSRA; Uncharacterized protein
STRING	Gorai.006G217200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24417	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	5e-70	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G217200.1
Entrez Gene	105800316

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]