PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G216400.1

Common Name

B456_006G216400, LOC105800308

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 273aa MW: 29536.7 Da PI: 6.7357

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G216400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Gorai.006G216400.1 76 YSCSFCRREFRSAQALGGHMNVH 98 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.53E-6	73	103	No hit	No description
SMART	SM00355	0.0098	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.219	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MAAELDLLSL TQLQKLAQSQ QNHNHHQLDT NLATVGSLMW YPKGQSHEVD DDSWEVRAFA 60 EDTGNVMGTT WPPRSYSCSF CRREFRSAQA LGGHMNVHRR DRARLHQAHP AAAGNGALNN 120 PTSPSSPSTT SSSTLLIPTQ EFVTNGGLCL LYQLHNPSDG VLTSSPPMDA WPIDSSSTLL 180 SVSPYPSYNL MAVTAATQSP INFPATPPML NSSSSSSSSS SSSFCYSTKA VHSRTRGDNN 240 NLNQGLNISN KEIPLEELDL ELRLGHKRPT TS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	4e-13	71	98	2	29	superman protein
2l1o_A	4e-13	71	98	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393526	1e-118	GQ393526.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0491 SSR marker CGR5518 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486799.1	0.0	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A0D2NWI3	0.0	A0A0D2NWI3_GOSRA; Uncharacterized protein
STRING	Gorai.006G216400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5284	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	5e-36	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G216400.1
Entrez Gene	105800308

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]