PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G208200.1
Common NameB456_006G208200, LOC105800222
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 338aa    MW: 37835 Da    PI: 5.7104
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G208200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19123173155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Gorai.006G208200.1 123 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAVVYDNAAIKLRG 173
                         59********.**********72....45*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.90E-33123180No hitNo description
PROSITE profilePS5103223.736124181IPR001471AP2/ERF domain
PfamPF008471.4E-11124173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-30124181IPR001471AP2/ERF domain
SMARTSM003801.7E-38124187IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21124181IPR016177DNA-binding domain
PRINTSPR003675.9E-10125136IPR001471AP2/ERF domain
PRINTSPR003675.9E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDHSPVHSIK YTEHRYQTKL LSPLLDVSLV KQPEMKRRIV RISVTDADAT DSSGDEDDDY  60
EEHASQLRCR NRVKKYVNEI TIESTLCPVQ NGRVSRSKTS LSKSSRKRPA MKVKATMKAP  120
ADKKFRGVRQ RPWGKWAAEI RDPLRRVRLW LGTYDTAEEA AVVYDNAAIK LRGPDALTNF  180
SNPKLQDKNS QKPLSSSDYH SGEESLNTNL CSPTSVLRCL SLSADEGDSQ SVKESRELRS  240
EPGAVVDDSC FTSGEKFSEF SDQSSLFPSD IFSSVPELFD DNTSFHDCFL KDDFSNGFLS  300
SGGDFEFGFG GFSRWQRVDD HFQDIGDLFG SDPLVAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20123180159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486666.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A0D2S0180.0A0A0D2S018_GOSRA; Uncharacterized protein
STRINGGorai.006G208200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-53cytokinin response factor 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]