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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.006G206100.3 |
Common Name | B456_006G206100, LOC105800201 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
Dof |
Protein Properties |
Length: 232aa MW: 25810.1 Da PI: 8.8783 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.006G206100.3 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 120.3 | 7e-38 | 15 | 76 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
k++al+cprC+s+ntkfCyynnysl qPryfCk+CrryWt+GG+lrn+PvGg +rk k+sss
Gorai.006G206100.3 15 KQQALNCPRCNSMNTKFCYYNNYSLRQPRYFCKTCRRYWTEGGSLRNIPVGGCSRKTKRSSS 76
7899******************************************************9875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MATDLERKAA AKPQKQQALN CPRCNSMNTK FCYYNNYSLR QPRYFCKTCR RYWTEGGSLR 60 NIPVGGCSRK TKRSSSSSSK KLPDLVNNPK IHGGQDLNLA YPVSEVYTTS MSEFVKVPNS 120 SVENSKKEIP SSLFPRCHVS AFELVTGMSS KGSNPFIPMP VPDPNTVYTP GFPLQEYKPT 180 LNFCVDGVEE INGRLLFPFQ DLKQTTDNED NKEQGDSSAG FWNGMLGGSS W*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. |
Uniprot | TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX618042 | 1e-146 | JX618042.1 Gossypium hirsutum clone NBRI_GE63365 microsatellite sequence. |