PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G196500.1 | ||||||||
Common Name | B456_006G196500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25636 Da PI: 7.7608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.5e-11 | 56 | 108 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr+llP ++K ++ Av Y+k+Lq Gorai.006G196500.1 56 KKSMHRDIERQRRQEMSTLYASLRTLLPLeY---IKGKRAISDHMNGAVSYVKDLQ 108 6899*************************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.02E-10 | 53 | 111 | No hit | No description |
SuperFamily | SSF47459 | 7.46E-13 | 54 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.09 | 55 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-8 | 56 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-10 | 56 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDEMFFHFSS GSDPQNTIPH DEILDYVPMG GSSSRGRQRK LLSTEKRENS NADDKKKSMH 60 RDIERQRRQE MSTLYASLRT LLPLEYIKGK RAISDHMNGA VSYVKDLQKR IDGLNAKRDE 120 LKKASDNWSG FEQGMTSNEA FPSSAVVRQS LDGVEVVIST SVGPKALTLS RVLQLLLEEG 180 LDVVNCITTR IDGGLIHTIQ TEVSDLRGVH VPYLEQKLNK VISSLSQTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670893.1 | 1e-167 | PREDICTED: transcription factor bHLH126-like | ||||
Swissprot | Q9STJ6 | 2e-47 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | A0A0D2S5Z0 | 1e-168 | A0A0D2S5Z0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G196500.1 | 1e-169 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 7e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G196500.1 |
Publications ? help Back to Top | |||
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