PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 245aa MW: 27157.3 Da PI: 9.5635

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G192400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.9	1.3e-14	73	120	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l d++ ++G g+W++ ++ g+ R++k+c++rw +yl Gorai.006G192400.1 73 KGAWSKLEDQKLTDYILKHGEGCWRSLPQAAGLLRCGKSCRLRWVNYL 120 79****************************99**********97 PP
2	Myb_DNA-binding	51	3.4e-16	126	168	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+ Gorai.006G192400.1 126 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTENEVKNHWN 168 89******************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.132	68	120	IPR017930	Myb domain
SuperFamily	SSF46689	2.27E-26	72	167	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-10	72	122	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-13	73	120	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-20	74	127	IPR009057	Homeodomain-like
CDD	cd00167	2.11E-8	75	120	No hit	No description
PROSITE profile	PS51294	26.074	121	175	IPR017930	Myb domain
SMART	SM00717	4.3E-15	125	173	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-15	126	168	IPR001005	SANT/Myb domain
CDD	cd00167	6.03E-11	128	171	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.0E-24	128	175	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MQSVTNPTAG SRKSSHGSWG QTQTLVYIYI LLVSLFISPP LPLLWSVAFA CLNSLPLGLQ 60 MRKPCCEKKD TSKGAWSKLE DQKLTDYILK HGEGCWRSLP QAAGLLRCGK SCRLRWVNYL 120 RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTE NEVKNHWNIH LRKKLLMMGI 180 DPNNRRSLLS PTLTKSNASN DSSSACQPFN PATASETISS TCLPDLNLDL TIAPPLSHQN 240 LALN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-25	70	175	4	108	B-MYB
1h8a_C	3e-25	70	175	24	128	MYB TRANSFORMING PROTEIN
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ459165	2e-65	AJ459165.1 Gossypium hirsutum partial myb135 gene, clone pGhMYB135.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486405.1	1e-179	PREDICTED: myb-related protein 308-like
Swissprot	P81393	3e-74	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A0D2S646	1e-178	A0A0D2S646_GOSRA; Uncharacterized protein
STRING	Gorai.006G192400.1	1e-179	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	4e-72	myb domain protein 3

Link Out ? help Back to Top
Phytozome	Gorai.006G192400.1
Entrez Gene	105800059

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]