PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G180900.1
Common NameB456_006G180900, LOC105799928
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 274aa    MW: 30395.9 Da    PI: 8.6355
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G180900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-072974346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        +WT +E +++ +a +++      +W  +a++++ g+t  +++  ++ 
  Gorai.006G180900.1 29 KWTHQENKRFENALALYDQQtpdRWFNVAAMIP-GKTVADVIKQYRE 74
                        7*****************99*************.*******999986 PP
2Myb_DNA-binding46.39.6e-15127171347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ +++ + +++G+g+W++I+r + ++Rt+ q+ s+ qky
  Gorai.006G180900.1 127 PWTEDEHRQFLMGLRKYGKGDWRSISRNFVTTRTPTQVASHAQKY 171
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.2482580IPR017884SANT domain
SMARTSM007171.1E-62678IPR001005SANT/Myb domain
PfamPF002495.6E-62974IPR001005SANT/Myb domain
CDDcd001676.21E-72975No hitNo description
SuperFamilySSF466893.3E-102982IPR009057Homeodomain-like
PROSITE profilePS5129418.509119176IPR017930Myb domain
SuperFamilySSF466891.51E-16122175IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17123175IPR006447Myb domain, plants
SMARTSM007171.4E-12124174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-12124171IPR009057Homeodomain-like
PfamPF002492.4E-12127171IPR001005SANT/Myb domain
CDDcd001677.26E-11127172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MMNRGFEILS PPSYSHASNW LFQESKDIKW THQENKRFEN ALALYDQQTP DRWFNVAAMI  60
PGKTVADVIK QYRELEEDVS DIEAGLIPIP GYLTDSFTFN WVNNHTPGGK TGTGTPPCDQ  120
ERNKGVPWTE DEHRQFLMGL RKYGKGDWRS ISRNFVTTRT PTQVASHAQK YFIRQLTGGK  180
DKRRPSIHDV TTLNIADTPS SSPDHGKPSS PKNASAVAGV TNEGAAIVFD QRSSGNALLS  240
PFCKVPSYGP KLDEQNLASG TLPTSQFGSY RGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1630941175RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486204.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-89DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D2NUG80.0A0A0D2NUG8_GOSRA; Uncharacterized protein
STRINGGorai.006G180900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-107MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]