PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G179700.1
Common NameB456_006G179700, LOC105799912
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 399aa    MW: 43524.7 Da    PI: 6.0694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G179700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.7e-175398147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
  Gorai.006G179700.1 53 KGPWSPEEDAILSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 98
                        79******************************.***********985 PP
2Myb_DNA-binding53.45.8e-17105149147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+++T eEd  ++ a++ +G++ W+ Iar ++ gRt++ +k++w++ 
  Gorai.006G179700.1 105 RKPFTDEEDRMIISAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 149
                         789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.348103IPR017930Myb domain
SuperFamilySSF466896.47E-3151146IPR009057Homeodomain-like
SMARTSM007172.5E-1552101IPR001005SANT/Myb domain
PfamPF002492.3E-165398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2654106IPR009057Homeodomain-like
CDDcd001671.86E-145597No hitNo description
PROSITE profilePS5129421.731104154IPR017930Myb domain
SMARTSM007171.5E-16104152IPR001005SANT/Myb domain
PfamPF002491.1E-14105149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-24107153IPR009057Homeodomain-like
CDDcd001671.45E-12107150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
METEVEAVDN GNGTTVAEIN VPSPPPLDGG EGGDCGSRDD SAAGGRTRKQ RVKGPWSPEE  60
DAILSELVSK FGARNWSLIA RGIAGRSGKS CRLRWCNQLD PAVKRKPFTD EEDRMIISAH  120
AVHGNKWAVI ARLLPGRTDN AIKNHWNSTL RRRYMDLGRI NTESANMMED AGCLDKTKAS  180
SEETLSCAED SSFRSLEWKD ASSSEKLDNQ SKGKALAGTQ SNHELIEPPT LFRPVARISA  240
FNVYNNMDAP EFVSPCSRPV PVLGPSIQTS KPDVGTCKLL EGVYTDRLVP LHCGHGCCGT  300
QNGQNKSLLG PEFVEFSEPP SFPNYELAAI ATDISNLAWL KSGLENNSVR AMDDATAGTS  360
HRSQVHMGHF EESQMSDRLR IEERNSKFMG TMTNLLST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-40521536107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486187.10.0PREDICTED: myb-related protein B-like
SwissprotQ425751e-108MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A0D2NUF60.0A0A0D2NUF6_GOSRA; Uncharacterized protein
STRINGGorai.006G179700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-110myb domain protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  4. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  5. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]