PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G162800.1
Common NameB456_006G162800, LOC105799749
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 343aa    MW: 37804.7 Da    PI: 6.6339
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G162800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+++++q+G+g +W + +++ g++R++k+c++rw++yl
  Gorai.006G162800.1 14 KGPWSPEEDAKLKEYIQQHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding36.89.2e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Gorai.006G162800.1  69 GEFSDDEDRIICTLFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.646962IPR017930Myb domain
SuperFamilySSF466896.5E-2711109IPR009057Homeodomain-like
SMARTSM007177.3E-131364IPR001005SANT/Myb domain
PfamPF002494.4E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-251569IPR009057Homeodomain-like
CDDcd001671.99E-91662No hitNo description
PROSITE profilePS5129421.60163117IPR017930Myb domain
SMARTSM007178.6E-1267115IPR001005SANT/Myb domain
PfamPF002491.8E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2270117IPR009057Homeodomain-like
CDDcd001675.06E-870113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIQ QHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC TLFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLFGM  120
VPQSQRKPHQ IPHASFSSVL QSSSPSSPSP SSPLLYNCSN NTYHTPARSF SCFEASYSSS  180
FSNSSASCVN AASVLQPQES LLGQIQHYQL HDNGVQMFGG EASCSSSDGS CSNQISHNKE  240
LENSNGTVYD GDHQQFGMYS YNNFYSEAAD GSQKLMIALN GDHGTDGWSD HHKSSNGLLD  300
ETETPLDYGI EGIKQLISTT STSSCNSFIF DENKADENLL YY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1156441e-110HQ115644.1 Gossypium hirsutum DNA-binding transcription factor blind 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485909.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A0D2S4F20.0A0A0D2S4F2_GOSRA; Uncharacterized protein
STRINGGorai.006G162800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-76myb domain protein 36
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]