PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G161200.1
Common NameB456_006G161200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 281aa    MW: 30607.7 Da    PI: 8.498
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G161200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039189211123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg  Fs+   L  H+r+H
  Gorai.006G161200.1 189 HECSMCGAEFSSGQALGGHMRRH 211
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-10114139IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182115142IPR007087Zinc finger, C2H2
SuperFamilySSF576676.05E-7115137No hitNo description
SMARTSM003550.45115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576676.05E-7184211No hitNo description
PfamPF139125.1E-12188212IPR007087Zinc finger, C2H2
SMARTSM003550.015189211IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847189211IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDSQEEVVAC KDQLQIIKGK RSKRPRQLSP LSLAMGSSPT TTATTSSGAE SGRNSDDWRG  60
FGSPTTSVEL AESTKEDEDM ANCLILLARG QTGKLAPEPV SIATTSKTMT GTYVHQCKTC  120
NRCFPSFQAL GGHRASHKKP KVANIEENNK GLMFMKEDVQ QPFSDMNTTL SLQITNKPAL  180
CHISKPKVHE CSMCGAEFSS GQALGGHMRR HRTIPNAAAA TTIVRPESDD KPKKPRTVLQ  240
LDLNLPAPED DHQRETKFSF ASKQDKLVLF SASSLVDCHY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231237PKKPRTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485883.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A0D2S4990.0A0A0D2S499_GOSRA; Uncharacterized protein
STRINGGorai.006G161200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.14e-56C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]