PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.006G148800.1 | ||||||||
Common Name | B456_006G148800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 278aa MW: 30729.7 Da PI: 4.6498 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.9 | 3.8e-37 | 10 | 64 | 7 | 61 |
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Gorai.006G148800.1 10 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 64 8***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-26 | 5 | 63 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.677 | 9 | 63 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.0E-31 | 9 | 63 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 11 | 47 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MEAYVEISPN CPRCGSSNTK FCYYNNYSLT QPRYFCKGCR RYWTKGGSLR NVPVGGGCRK 60 NRRGKSLLRL PTDGAPCNKS LSSDGAPCYD NKVNALSDSN TSSSMSDGSH IDLALLFANF 120 LNNQQPENKS SFEVPELPTE FDPSREFPSL SNTNMESSLQ LPEENGVTGC LTHSDFSTEY 180 HLSNNDQIYH PGLDYLDRVQ QCTGDETSNY ALPPLPGDDL SSQEILWPNS HSSITHALHL 240 QATQEPLLGP ETQDPNLLFG NWSPFDLSSD DTFSTRT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483262.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.5 | ||||
Refseq | XP_016673395.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.5-like | ||||
TrEMBL | A0A1U8I581 | 0.0 | A0A1U8I581_GOSHI; dof zinc finger protein DOF3.5-like | ||||
TrEMBL | A0A2P5QG34 | 0.0 | A0A2P5QG34_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G148800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9141 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52440.1 | 5e-38 | Dof family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.006G148800.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|