PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G140200.1
Common NameB456_006G140200, LOC105799526
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 376aa    MW: 41630.7 Da    PI: 8.8273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G140200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12270315655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YI++Lq
  Gorai.006G140200.1 270 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYINDLQ 315
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15267326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-12268317No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13269323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-11270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDSSTPPSCQ NQNSQPNSEL LRFLSAPSSL LAPFSESLDT GLSKGGPHSD RLIYRFMNPS  60
QDKSGTEATV DHANSRQTFP GLPPHYPRQT SSAMDTSYFL LGMDPRCGKP GTSSLLRQSS  120
SPPGLFTNLS VQTGLGSYTN GELSPSSSNR LKNQISFSSR LPSSLGILSQ ISEIGDDAKL  180
GTGYQYGSWN DSANFPENFS GSKTTQDNDP NFFSANQNSD SGSRLHVLSH HLSLPKTSNE  240
TPAMEKFLSF QDSVPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQTNT  300
ADMLDLAVDY INDLQKQFKV TEREPQFPIQ HFFLVLCAFF SSYTCNNMIF FSDAKRPSCK  360
LQVLKYLKPI PNQVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485593.10.0PREDICTED: transcription factor bHLH130-like isoform X2
SwissprotQ66GR31e-92BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0D2RW670.0A0A0D2RW67_GOSRA; Uncharacterized protein
STRINGGorai.006G140200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]