PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G139900.1

Common Name

B456_006G139900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 246aa MW: 26628.9 Da PI: 6.7973

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G139900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.9	5.8e-06	166	207	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++iN ++ L+el+P + +k a +L + +++++sLq Gorai.006G139900.1 166 KARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 207 56******************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.039	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-6	159	211	No hit	No description
SMART	SM00353	2.0E-6	161	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-11	166	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-11	166	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MESKAGTTET RSNITASDGD QVAALESLQF TDEFHRLILA PPSDNATSLT ALLELPASRA 60 LELLHSPASA KLIAASASSF EALKGNFLFP SNTTLIDQAA RSSVFAGGVN NTNNKSNAPE 120 TTSNNATLNL EKAVKSEPAE TESCQPLVSD PAVEKRNFKR KDREKKARRE KINARMKLLQ 180 ELVPGCNKIS GTALVLDEII NHVQSLQNQV EFLSMRLAAV NPRTDFNLNS IFTTEFSAFF 240 RFGGN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.852	0.0	flower\|seedling\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48747464	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485587.1	1e-159	PREDICTED: transcription factor bHLH48 isoform X1
Refseq	XP_012485588.1	1e-159	PREDICTED: transcription factor bHLH48 isoform X2
Refseq	XP_012485591.1	1e-159	PREDICTED: transcription factor bHLH48 isoform X4
Swissprot	Q8VZ02	5e-56	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A0D2S375	1e-176	A0A0D2S375_GOSRA; Uncharacterized protein
STRING	Gorai.006G139900.1	1e-176	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	2e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G139900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]