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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G137400.2 | ||||||||
Common Name | B456_006G137400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 22997 Da PI: 9.0934 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 148 | 170 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H Gorai.006G137400.2 148 ECPQCGAKFSSVTTLVDHVEKvH 170 5*****************99888 PP | |||||||
2 | zf-C2H2 | 17.5 | 1.2e-05 | 185 | 207 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ L+ H + H Gorai.006G137400.2 185 VCPKCSKGFRDPVALVEHVERdH 207 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1110.10 | 5.9E-11 | 11 | 65 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 4.32E-10 | 12 | 62 | No hit | No description |
Pfam | PF01428 | 1.0E-8 | 21 | 61 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 9.951 | 147 | 175 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.042 | 147 | 170 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13894 | 2.6E-4 | 148 | 170 | No hit | No description |
SuperFamily | SSF57667 | 7.66E-5 | 148 | 203 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 149 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 151 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.85 | 184 | 212 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.4 | 184 | 207 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 186 | 207 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MHVNTECDPS NYDKVTKKKK CPVPGCREVL TFSNTIKCRD CTLDHCLKHR FGPDHKCPGP 60 KKSDPGFPFM GLLSRSRKES KTNQAPATSS SKWATSFLNA ASTVRASAEA GMTKLGSEIS 120 QKLQIARDGV GLSSSGGGSN GNAGQVEECP QCGAKFSSVT TLVDHVEKVH ERNNQSRVFK 180 MSIDVCPKCS KGFRDPVALV EHVERDHGGT SKA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012485543.1 | 1e-155 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
Swissprot | Q8VZ42 | 5e-81 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A0D2SXI9 | 1e-156 | A0A0D2SXI9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G137400.1 | 1e-154 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 4e-81 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G137400.2 |
Publications ? help Back to Top | |||
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