PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G137400.1
Common NameB456_006G137400, LOC105799498
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 294aa    MW: 32177.7 Da    PI: 8.3326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G137400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005228250223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp Cg  Fs+  +L+ H  + H
  Gorai.006G137400.1 228 ECPQCGAKFSSVTTLVDHVEKvH 250
                         5*****************99888 PP
2zf-C2H216.91.8e-05265287223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp+C+k F+++  L+ H  + H
  Gorai.006G137400.1 265 VCPKCSKGFRDPVALVEHVERdH 287
                         7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.4E-12650No hitNo description
PROSITE profilePS510397.6931056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.0E-101153IPR000058Zinc finger, AN1-type
PfamPF014283.4E-131351IPR000058Zinc finger, AN1-type
SMARTSM001540.00311352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.107.2E-1191145IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.08E-893142No hitNo description
PROSITE profilePS510397.91398145IPR000058Zinc finger, AN1-type
PfamPF014281.7E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.034101142IPR000058Zinc finger, AN1-type
SMARTSM003550.042227250IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951227255IPR007087Zinc finger, C2H2
PfamPF138944.1E-4228250No hitNo description
SuperFamilySSF576676.37E-5228283No hitNo description
PROSITE patternPS000280229250IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4231250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.4264287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85264292IPR007087Zinc finger, C2H2
PROSITE patternPS000280266287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGTPQFPDLG KHCSVEDCKQ IDFLPFTCDR CHLVYCLEHR SYIKHHCPKA DKKDVTVVIC  60
PLCAKGVRLI PDEDPNITWE MHVNTECDPS NYDKVTKKKK CPVPGCREVL TFSNTIKCRD  120
CTLDHCLKHR FGPDHKCPGP KKSDPGFPFM GLLSRSRKES KTNQAPATSS SKWATSFLNA  180
ASTVRASAEA GMTKLGSEIS QKLQIARDGV GLSSSGGGSN GNAGQVEECP QCGAKFSSVT  240
TLVDHVEKVH ERNNQSRVFK MSIDVCPKCS KGFRDPVALV EHVERDHGGT SKA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485543.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-135SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A0D2S3270.0A0A0D2S327_GOSRA; Uncharacterized protein
STRINGGorai.006G137400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]