PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 342aa MW: 39429.1 Da PI: 9.871

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G132000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55.5	7.2e-18	17	66	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien+ r ++fskRr gi KK +ELS+LC+ e++ iifs++gk y ++ Gorai.006G132000.1 17 KIIENEDDRLISFSKRRFGIYKKISELSTLCGCEILFIIFSPKGKPYSFA 66 579******************************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.1E-25	9	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.45	9	69	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.34E-30	10	85	No hit	No description
SuperFamily	SSF55455	8.76E-24	10	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-20	19	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MASSSKKTRG KQKIEIKIIE NEDDRLISFS KRRFGIYKKI SELSTLCGCE ILFIIFSPKG 60 KPYSFAHPSI EAVTKRFLNP HQPLHETTDA PIETYRKVRI KSLVQDYNEV HDQLDASKEK 120 QKAFSLAQQS RGSESHHWWK TPIYQLNPRE LHEQDKRFAE FINLVSIARD KKIASISSMH 180 AAMDEDVPFV VPPRYGPSLH EILFIIFSPK GKPYSFAHPS IEVVTKRFLN PNQPLHETTN 240 ALVEAYHYNE VHDQLDASKE KQKAFYLAQQ SRGSESYHRW KAPIYQLNLR ELHERDKRFV 300 KFINLISVAR DKKIASISSM HAAMDGDVPF VVPPRYGPSL Q*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MASSSKKTRG KQKIEIKIIE NEDDRLISFS KRRFGIYKKI SELSTLCGCE ILFIIFSPKG  60
KPYSFAHPSI EAVTKRFLNP HQPLHETTDA PIETYRKVRI KSLVQDYNEV HDQLDASKEK  120
QKAFSLAQQS RGSESHHWWK TPIYQLNPRE LHEQDKRFAE FINLVSIARD KKIASISSMH  180
AAMDEDVPFV VPPRYGPSLH EILFIIFSPK GKPYSFAHPS IEVVTKRFLN PNQPLHETTN  240
ALVEAYHYNE VHDQLDASKE KQKAFYLAQQ SRGSESYHRW KAPIYQLNLR ELHERDKRFV  300
KFINLISVAR DKKIASISSM HAAMDGDVPF VVPPRYGPSL Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483076.1	1e-145	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2Q9A1	0.0	A0A0D2Q9A1_GOSRA; Uncharacterized protein
STRING	Gorai.006G132000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	4e-29	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Gorai.006G132000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]