PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G129100.1
Common NameB456_006G129100, LOC105799410
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 322aa    MW: 35628.8 Da    PI: 6.1724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G129100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-142168148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++lv +    G g+W+ +ar  g+ R++k+c++rw +yl
  Gorai.006G129100.1 21 KGLWSPEEDDKLVTYMLTNGRGCWSDVARNAGLQRCGKSCRLRWINYL 68
                        678*******************************************97 PP
2Myb_DNA-binding51.13.1e-1674117146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
  Gorai.006G129100.1  74 RGAFSPQEQELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 117
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6931668IPR017930Myb domain
SuperFamilySSF466891.12E-2719115IPR009057Homeodomain-like
SMARTSM007173.7E-112070IPR001005SANT/Myb domain
PfamPF002494.3E-132168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-222275IPR009057Homeodomain-like
CDDcd001673.13E-92468No hitNo description
PROSITE profilePS5129425.15369123IPR017930Myb domain
SMARTSM007172.6E-1573121IPR001005SANT/Myb domain
PfamPF002491.4E-1474117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2576124IPR009057Homeodomain-like
CDDcd001678.67E-1176116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMRKPPSMKG NNSNGTNKHK KGLWSPEEDD KLVTYMLTNG RGCWSDVARN AGLQRCGKSC  60
RLRWINYLRP DLKRGAFSPQ EQELIVHLHS ILGNRWSQIA ARLPGRTDNE IKNFWNSTIK  120
KRLKHSSSTA SHNASDSSSE PNKDAMAAGF MTMLEQEVPP IYLDLSSAWS NSFLQSMVLN  180
HSGNSLPMLQ HGRNVVGAVG YFDPAGSCVT QAEVNGDSSL GESEIFGSVD NGIERELYVP  240
PLESIGKDLK TENSVDGNIN NGFNIINTSG VRSNNNNNMS KNMDSDDVGS FWIGEELKVG  300
EWDMENLMKD VSSFPFLDFQ S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26211237108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5897878e-87JX589787.1 Gossypium hirsutum clone NBRI_GE24554 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485407.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A0D2RVA40.0A0A0D2RVA4_GOSRA; Uncharacterized protein
STRINGGorai.006G129100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61152347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-70myb domain protein 46
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]