PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G125000.1
Common NameB456_006G125000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 259aa    MW: 29751.5 Da    PI: 9.4974
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G125000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.4e-36211132103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+ +++++sw en++sfvv+  ++fak++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k+
  Gorai.006G125000.1  21 FLTKTYQLVDDPLTDHIVSWGENETSFVVWRITDFAKNLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANENFRKGAKH 102
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Gorai.006G125000.1 103 LLSEIHRRKTH 113
                         ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5517110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-3118110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3021110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MERSEELVFS VEPQNPVPAP FLTKTYQLVD DPLTDHIVSW GENETSFVVW RITDFAKNLL  60
PNYFKHNNFS SFVRQLNTYG FKKVVADRWE FANENFRKGA KHLLSEIHRR KTHRNHHDQQ  120
QPQQLFLKPE DSHGWMESPS PSPRGSSTDI LTALTQDNQR LRRKNYMLVS ELTHMKTLYN  180
DIIYFIQNHV KPVPYQQKAN TVGSNIIQLG PSIHVSGTET AETSVLGNSS SLTVPNNSNV  240
KLFGVPLIDN ERFAPRKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-221011220131Heat shock factor protein 1
5d5v_B3e-221011220131Heat shock factor protein 1
5d5v_D3e-221011220131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486190.0KJ748619.1 Gossypium hirsutum HSF16 (HSF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673408.10.0PREDICTED: heat stress transcription factor B-4d-like
SwissprotQ9C6357e-78HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0D2NRA60.0A0A0D2NRA6_GOSRA; Uncharacterized protein
STRINGGorai.006G125000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-80heat shock transcription factor B4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]