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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.006G125000.1 |
Common Name | B456_006G125000 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HSF |
Protein Properties |
Length: 259aa MW: 29751.5 Da PI: 9.4974 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.006G125000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 114.8 | 5.4e-36 | 21 | 113 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+y++++d+ +++++sw en++sfvv+ ++fak++Lp+yFkh+nf+SFvRQLn+YgFkkv ++ weF++++F+kg k+
Gorai.006G125000.1 21 FLTKTYQLVDDPLTDHIVSWGENETSFVVWRITDFAKNLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANENFRKGAKH 102
9****************************************************************999.........************** PP
XXXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkkse 103
ll++i+r+k++
Gorai.006G125000.1 103 LLSEIHRRKTH 113
********975 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MERSEELVFS VEPQNPVPAP FLTKTYQLVD DPLTDHIVSW GENETSFVVW RITDFAKNLL 60 PNYFKHNNFS SFVRQLNTYG FKKVVADRWE FANENFRKGA KHLLSEIHRR KTHRNHHDQQ 120 QPQQLFLKPE DSHGWMESPS PSPRGSSTDI LTALTQDNQR LRRKNYMLVS ELTHMKTLYN 180 DIIYFIQNHV KPVPYQQKAN TVGSNIIQLG PSIHVSGTET AETSVLGNSS SLTVPNNSNV 240 KLFGVPLIDN ERFAPRKH*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |