PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G120300.1

Common Name

B456_006G120300, LOC105797921

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 224aa MW: 25141 Da PI: 8.4796

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G120300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48	2.3e-15	46	98	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+ +Ns f+ Lr+llP a + kK+s +++ +Av+YI +Lq Gorai.006G120300.1 46 KKLNHNASERHRRKTVNSLFSSLRSLLPLA--DQMKKVSIPATVSEAVKYIPELQ 98 6789***********************6..49999*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.811	45	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-14	46	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-12	46	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-16	46	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.4E-11	51	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MCALAPFPTP NWPLLNPIGL QLNYIYENNE TLDSVPQASF DPCVVKKLNH NASERHRRKT 60 VNSLFSSLRS LLPLADQMKK VSIPATVSEA VKYIPELQEQ VERLVHKKEE LLLRISQQGG 120 IKRCSDGRCS SSATVSINRL TSDSEVVIQI TLRKDRVQKT QLSEILHILE EQQGLILLNA 180 TSFESFGGMI FYNIHLQVAP KTTYQLRESD IEALRGKLLA LCN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582796	3e-67	JX582796.1 Gossypium hirsutum clone NBRI_GE15694 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483248.1	1e-164	PREDICTED: transcription factor ORG2-like isoform X1
TrEMBL	A0A0D2SW69	1e-163	A0A0D2SW69_GOSRA; Uncharacterized protein
STRING	Gorai.006G120300.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM482	28	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G120300.1
Entrez Gene	105797921

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]