PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G115600.1

Common Name

B456_006G115600, LOC105799260

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 718aa MW: 78532.6 Da PI: 7.5843

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G115600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.2	6.7e-09	414	451	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt qV++WF N R + Gorai.006G115600.1 414 FEHflHPYPKDSDKHMLAKQTGLTRGQVSNWFINARVR 451 554459******************************88 PP
2	BELL	124.3	4.8e-40	278	349	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+s+l+eV++rY+qy++q+++v+ssFe++aglg+ak+Yt+lAlk+iS++FrcLkdai++qi Gorai.006G115600.1 278 QRQELQMKKAKLVSMLDEVEQRYRQYHHQMHIVVSSFEQAAGLGAAKSYTALALKTISKQFRCLKDAISGQI 349 69*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.9E-65	207	347	IPR006563	POX domain
Pfam	PF07526	2.6E-50	212	346	IPR006563	POX domain
PROSITE profile	PS50071	11.872	392	455	IPR001356	Homeobox domain
CDD	cd00086	1.39E-11	395	456	No hit	No description
SMART	SM00389	1.3E-8	395	459	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.01E-16	396	461	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-28	398	461	IPR009057	Homeodomain-like
Pfam	PF05920	1.5E-17	412	451	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MATYFHGSSD FQAASADGLQ TLYLMNPNYV PYADTHQQPS AATNMFFLNP TSLPQAPPPN 60 HHQRFLGLPL PTPSTSIKPL NSDDPHRPSP LQGVVPGFHS NLWGSSVDHQ NSPGSSHPQV 120 VSAAATGDNS GGSHDVASQS GFQRPVVSPR QGLSLSLSSQ QVGYRSSNNV ETDIQGQPQV 180 PTMSLGEDVR ISGNSPSSVS VLSNGISGAQ SVVLGSKYLR AAQELLDEVV NVGKGIKTDV 240 SEGTKEEKIK VNKESVAGEG SSAGENGAKR GAELTTAQRQ ELQMKKAKLV SMLDEVEQRY 300 RQYHHQMHIV VSSFEQAAGL GAAKSYTALA LKTISKQFRC LKDAISGQIK ATSKSLGEED 360 CLGAKVDGSR LRYVDHQLRQ QRALQQLGMI QHNAWRPQRG LPERAVSVLR AWLFEHFLHP 420 YPKDSDKHML AKQTGLTRGQ VSNWFINARV RLWKPMVEEM YLEEVKEQER NGSEVKANKS 480 VQKESESSSS AHQENVSFMM NQVKAQSQPE KSINQQQNMP PTEFSNSTMG GSFLPQTATA 540 FNLIGSCDLD GAAQRSPKKP RSSVNELQNS PSSILSMDME MKQGETREIN MNFGDERLPK 600 DSYSFFTGTD NTGSGFPTYS AMGDIGRFDP NQLTQRFHGN SVSLTLGLPH CENLSLSGNH 660 QSLLSNQNIQ LGRRLELGQS EVDFCGINNT QQASHSSTFE MQNRKRFAAQ LLPDFVA*

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MATYFHGSSD FQAASADGLQ TLYLMNPNYV PYADTHQQPS AATNMFFLNP TSLPQAPPPN  60
HHQRFLGLPL PTPSTSIKPL NSDDPHRPSP LQGVVPGFHS NLWGSSVDHQ NSPGSSHPQV  120
VSAAATGDNS GGSHDVASQS GFQRPVVSPR QGLSLSLSSQ QVGYRSSNNV ETDIQGQPQV  180
PTMSLGEDVR ISGNSPSSVS VLSNGISGAQ SVVLGSKYLR AAQELLDEVV NVGKGIKTDV  240
SEGTKEEKIK VNKESVAGEG SSAGENGAKR GAELTTAQRQ ELQMKKAKLV SMLDEVEQRY  300
RQYHHQMHIV VSSFEQAAGL GAAKSYTALA LKTISKQFRC LKDAISGQIK ATSKSLGEED  360
CLGAKVDGSR LRYVDHQLRQ QRALQQLGMI QHNAWRPQRG LPERAVSVLR AWLFEHFLHP  420
YPKDSDKHML AKQTGLTRGQ VSNWFINARV RLWKPMVEEM YLEEVKEQER NGSEVKANKS  480
VQKESESSSS AHQENVSFMM NQVKAQSQPE KSINQQQNMP PTEFSNSTMG GSFLPQTATA  540
FNLIGSCDLD GAAQRSPKKP RSSVNELQNS PSSILSMDME MKQGETREIN MNFGDERLPK  600
DSYSFFTGTD NTGSGFPTYS AMGDIGRFDP NQLTQRFHGN SVSLTLGLPH CENLSLSGNH  660
QSLLSNQNIQ LGRRLELGQS EVDFCGINNT QQASHSSTFE MQNRKRFAAQ LLPDFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	401	459	5	63	Homeobox protein Meis2
3k2a_B	2e-16	401	459	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.3270	0.0	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615260	8e-98	JX615260.1 Gossypium hirsutum clone NBRI_GE59161 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485171.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_012485172.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
TrEMBL	A0A0D2Q7Y9	0.0	A0A0D2Q7Y9_GOSRA; Uncharacterized protein
STRING	Gorai.006G115600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16274	5	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-122	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Gorai.006G115600.1
Entrez Gene	105799260

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]