PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G111400.1
Common NameB456_006G111400, LOC105799211
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 350aa    MW: 39230.3 Da    PI: 8.2894
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G111400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05188207120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C++C+k+F+r  n++ H+
  Gorai.006G111400.1 188 FACSICSKTFNRYNNMQMHM 207
                         78*****************9 PP
2zf-C2H215.64.5e-05272294123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk+F  k + ++H +++
  Gorai.006G111400.1 272 FMCRKCGKPFAVKGDWRTHEKNC 294
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-5179211No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5188207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741188215IPR007087Zinc finger, C2H2
SMARTSM003550.17188210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SMARTSM00355230235267IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.24E-6258292No hitNo description
Gene3DG3DSA:3.30.160.605.0E-5259292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035572272292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKMGFRSYHV DEFQALNFIE WLKPSSSPTP SSSLSLSLSS SSSSSSSSSS NDQQVQIINP  60
MAILKLPVSF QQQQQQQDGG QLGQEPIQCL PLLSRLTENK SLKGDDVGNI VKEENIEKVT  120
VSLHIGLPNS STGDDGDNNN NYSVAENKVF KEEEEPMKKS CFHGCSFNTE SRFWIPTPAQ  180
ILVGPMQFAC SICSKTFNRY NNMQMHMWGH GSEYRKGPDS LKGTQPTAML RLPCYCCAHG  240
CKNNINHPRA KPLKDFRTLQ THYKRKHGAK PFMCRKCGKP FAVKGDWRTH EKNCGKLWYC  300
TCGSDFKHKR SLKDHIRSFG NGHSPHPSLE GFEDLDKDCI TGSEDELTH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485097.10.0PREDICTED: zinc finger protein WIP3-like
RefseqXP_016671913.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-127ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0D2S0X50.0A0A0D2S0X5_GOSRA; Uncharacterized protein
TrEMBLA0A1U8I6R40.0A0A1U8I6R4_GOSHI; zinc finger protein WIP3-like
STRINGGorai.006G111400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-118WIP domain protein 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]