PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G109300.2
Common NameB456_006G109300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 194aa    MW: 20079.2 Da    PI: 4.3841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G109300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05167190123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ C+ksF +   L++H +  H
  Gorai.006G109300.2 167 FSCGSCSKSFGSEGGLESHKKAkH 190
                         89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.801167193IPR007087Zinc finger, C2H2
PROSITE patternPS000280169190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MLSSVTSDDE FDSEEESSED EELPVAAENG KAKTDAKTAK ANAGKPDAVK QAVKIAEPSN  60
SKKNEDDDDD SDSEDGSGSD DEDDSEDEDE EMSVDESSDE DEETPKKVES SKKRPAEAAT  120
PVSAKKAKPA ATPQKTDGKK GGHTATPHPS KQAGKTSGKS PKSGGQFSCG SCSKSFGSEG  180
GLESHKKAKH GGK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.17750.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488171590.0
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485063.11e-123PREDICTED: histone deacetylase HDT1-like isoform X1
SwissprotQ8LJS25e-31HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A0D2SVG71e-128A0A0D2SVG7_GOSRA; Uncharacterized protein
STRINGGorai.006G109300.11e-122(Gossypium raimondii)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]