PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G104700.1
Common NameB456_006G104700, LOC105799141
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 377aa    MW: 41767 Da    PI: 7.8719
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G104700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-07220242123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cgk F+r  nL+ H+r H
  Gorai.006G104700.1 220 HYCQVCGKGFKRDANLRMHMRAH 242
                         68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-6218245No hitNo description
SMARTSM003550.0034220242IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-7220275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653220247IPR007087Zinc finger, C2H2
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
SMARTSM0035562277310IPR015880Zinc finger, C2H2-like
SMARTSM0035524315337IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MISDTIPSSF PNASQALPMY PMTDHQDHIN VPYSCLEAPG SGSDLAPSTS LLYNLSILED  60
KVNQLQSLVS NLISPDQIHP ESTGSLAIAS MDSLVQEIIG AASSMGLVSQ HMSLGTTSGN  120
NNGISKQPNF TDDFAGGNLV QERGQGSYPS VDQTFSWYDR NSIHNNRSLQ VGNADKLKER  180
KELGEMVQRS EISEGSQGDA GTNYDIVELD AEDLLAKYTH YCQVCGKGFK RDANLRMHMR  240
AHGDEYKTNA ALVNPMKSHE GSSNGMGNCS TKFPKRYSCP YEGCRWNQKH ANFQPLKSMI  300
CVKNHYKRSH CPKMYVCKRC NRKQFSLLSD LRTHEKHCGD LRWQCSCGNT FSRKDKLMGH  360
VALFVGHRPV VAHSLH*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484996.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ0WT241e-109STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0D2Q7580.0A0A0D2Q758_GOSRA; Uncharacterized protein
STRINGGorai.006G104700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-111C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]