PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G097000.1
Common NameB456_006G097000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 244aa    MW: 26816.6 Da    PI: 4.7718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G097000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-1662109253
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                          ykGVr ++ +g+Wv+eIr p++   + r++lg+f tae+Aa+a++ a + +
  Gorai.006G097000.1  62 IYKGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFRTAEMAARAHDVASLTI 109
                         69****998.**********843...6*******************997765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-3061121No hitNo description
PfamPF008473.9E-1161109IPR001471AP2/ERF domain
SMARTSM003804.6E-3362125IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2062120IPR016177DNA-binding domain
PROSITE profilePS5103222.22162119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3162120IPR001471AP2/ERF domain
PRINTSPR003673.6E-106374IPR001471AP2/ERF domain
PRINTSPR003673.6E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAESNHCSSS ETESSITNNN SSSSSLRKPN NPSAVEVAAT SMIIDQGKKR PRPRDSSTKH  60
PIYKGVRMRS WGKWVSEIRQ PRKKSRIWLG TFRTAEMAAR AHDVASLTIK GDSAALNFPD  120
LAELLPRPVS LLPRDIQAAA VKAASMVNLN RPSSSSSSSS LSESSEEPEE LSEIVELPNI  180
EGNFDSFFDS GNEFVLIDSV DVWVYDPSQD FNGGFYDQTW DVTENFKLNS GSFETFSSEN  240
NLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1744119172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14852KRPRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3935531e-125GQ393553.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0518 SSR marker CGR5551 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483238.11e-177PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD35e-56DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2SUT61e-176A0A0D2SUT6_GOSRA; Uncharacterized protein
STRINGGorai.006G097000.11e-176(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]