PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G092500.1 | ||||||||
Common Name | B456_006G092500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 402aa MW: 42748.1 Da PI: 7.0457 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 18 | 39 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k+Fs++ L H+r H Gorai.006G092500.1 18 TCFYCNKVFSSHRALGGHLRIH 39 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.91 | 17 | 44 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.54E-5 | 18 | 43 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MNFLLPRDDS EEHAGTKTCF YCNKVFSSHR ALGGHLRIHQ DGRILRALNY PGGSSSSVNN 60 TGNPPASLPN SQLNSFASFN SLSAITSNSV NNSGNPPASL PNSQPNSSSS FNSPTQFSTS 120 SVNNSGNSPA SLPNNQLNST AFNSLTLLPA AHLACDFSWM IYLNETNQVS RSQFIGGYSG 180 VPLIPVILSP DFSYGYSYGA TYHHNSLASR AFAPVGSNVD FPYVCSSCAA YYHNILASRA 240 FVPVGMIAAM PSAAFALFGS VVARGFLVDS SLFLGSNGVR QFNTNEFQIS QVTLSPSFGN 300 ALPNIQAQNA GPPSAGSANV GRSERRSSGK RSREADRSRN AETSNASRRP RIAPNEHVEP 360 ENCPKKELQL FVDVVVPSSS SEASSSAEEE DLVDMDLSLH L* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017608664.1 | 1e-107 | PREDICTED: uncharacterized protein LOC108454644 | ||||
TrEMBL | A0A0D2SUI4 | 0.0 | A0A0D2SUI4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G092500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24781 | 3 | 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G092500.1 |
Publications ? help Back to Top | |||
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