PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G079000.1
Common NameB456_006G079000, LOC105798888
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 908aa    MW: 102684 Da    PI: 7.9757
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G079000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.12.4e-51291462118
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         ++e k+rwl+++ei+aiL n++ + + +++ + pksg++++++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++n
  Gorai.006G079000.1  29 MEEaKSRWLRPNEIHAILCNHKYFPIYMKPVNLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDN 119
                         55669************************************************************************************** PP

                CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                         ptf rrcywlL+++le+ivlvhy+e++
  Gorai.006G079000.1 120 PTFVRRCYWLLDKSLEHIVLVHYRETQ 146
                         ************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.44925151IPR005559CG-1 DNA-binding domain
SMARTSM010762.4E-7528146IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4531144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.6E-4348449IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.54E-11362449IPR014756Immunoglobulin E-set
SuperFamilySSF484031.71E-17539659IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-16549660IPR020683Ankyrin repeat-containing domain
CDDcd002041.84E-16553657No hitNo description
PROSITE profilePS5029715.406556657IPR020683Ankyrin repeat-containing domain
PfamPF127966.4E-7570659IPR020683Ankyrin repeat-containing domain
SMARTSM002482.1E-4598627IPR002110Ankyrin repeat
PROSITE profilePS5008810.579598630IPR002110Ankyrin repeat
SMARTSM002482400637668IPR002110Ankyrin repeat
SuperFamilySSF525401.95E-6706812IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM00015280708730IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.504709738IPR000048IQ motif, EF-hand binding site
SMARTSM0001569761783IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.218762791IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022784806IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.908785809IPR000048IQ motif, EF-hand binding site
PfamPF006125.1E-4789806IPR000048IQ motif, EF-hand binding site
SMARTSM0001514864886IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.535866894IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MDVGGSSPLV GSEIHGFRTL ADLDVQTMME EAKSRWLRPN EIHAILCNHK YFPIYMKPVN  60
LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP  120
TFVRRCYWLL DKSLEHIVLV HYRETQESQG SPATPGNSNS SSITDQSTPL NVMEEFDSGA  180
GNAYYEEPGN SVDVRNHEMR LHEINTLEWD ELLVTNDSND STISRRDNNS CFQQLNQTTG  240
NGFLNYGGPI SADNLSTEIS MLVNLVEPVA QSNNTYFNTP TTVCNTISSS QINPNVQQKD  300
SIATGAGDPL DLLINDGLNS QGSFGKWVNY TITESPVSGD SMQESSVSSV QDSFTSPEYI  360
FTITEVSHEW AYSTEKTKIL VTGFFHQAYQ HLVKSNLVCV CGDVCNPAEV IQVGVYRCVL  420
PQHSPGLVNL YMSLDGHKPI SQVLSFEYRV PLSHDPLVPV EDESRWKEFQ LQMRLAYLLF  480
STSKNLNILS GKVSPNTLKE AKNFAQKTSS ISNSWTYLLK SIEENRASFT QAKDGLFEIA  540
LKNRLKDWLL ERIIEGSKIT DFDTEGLGVL HLCAILGYTW AIHLFSWSGL SLDFRDKRGW  600
TALHWAAYYG REKMVAALLS AGAKSYLVTD PTTQNPNGCT AADLASLKGY DGLAAYLSEE  660
ALVAQFNEMA VAGNASGSLK TSRTEVTHTD TLNEDELYLK DTLAAYRTAA DAAARIQNAF  720
RAHSLKIRTK AIESSTPEDE ARSIVAAMKI QHAFRNFETK RKMAAAARIQ YRFRTWKIRK  780
EFLNLRHQAT KIQAAFRGLL VRRQYRKITW SVGVLEKAIL RWRLKRKGLR GLQINTVDTV  840
TEQRPESDTE EDFYRTSRRQ AEQRVEKAVV RVQAMFRSKK AQEDYRRMKL AYDQAMLEYQ  900
SLRDPTS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484572.10.0PREDICTED: calmodulin-binding transcription activator 5-like
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A0D2NNF40.0A0A0D2NNF4_GOSRA; Uncharacterized protein
STRINGGorai.006G079000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]