PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G078000.1 | ||||||||
Common Name | B456_006G078000, LOC105798875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 21721.2 Da PI: 9.0649 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00086 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H Gorai.006G078000.1 49 FECQFCHRGFANSQALGGHQNAH 71 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.73E-6 | 47 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-4 | 47 | 75 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.427 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MNSADNYGDD EPGCGKPSSS TMKLFGFQVG ADEECPPSVR RNVSEYRRFE CQFCHRGFAN 60 SQALGGHQNA HKRERRAKQG SFFTLHHQQQ QQLKQRFLTT GPVISPHSAR TRRLAYGRGS 120 TSMAPRGGLS AAAPSLPMLT PRGPCPFHVG GGGQGQGQGP FQVQNHEVGV NLTANEVIEE 180 DNIDLHLRLA PFIDRANGP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012484560.1 | 1e-146 | PREDICTED: zinc finger protein KNUCKLES-like | ||||
TrEMBL | A0A0D2Q5A5 | 1e-145 | A0A0D2Q5A5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G078000.1 | 1e-146 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20638 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 5e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G078000.1 |
Entrez Gene | 105798875 |
Publications ? help Back to Top | |||
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