PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G064000.1
Common NameB456_006G064000, LOC105798709
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 255aa    MW: 28783.4 Da    PI: 6.5931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G064000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lv+ +  +G  +W++ ++  g++R++k+c++rw +yl
  Gorai.006G064000.1 14 KGPWTAEEDRKLVNFIVTHGQCCWRSLPKLAGLRRCGKSCRLRWTNYL 61
                        79********************************************97 PP

2Myb_DNA-binding52.11.5e-1671111547
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  Gorai.006G064000.1  71 NQDEEQLVIDLHARLGNR-WSKIAARFP-GRTDNEIKNHWNTH 111
                         589***************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-21562IPR009057Homeodomain-like
PROSITE profilePS5129414.841961IPR017930Myb domain
SuperFamilySSF466892.9E-2711108IPR009057Homeodomain-like
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-141461IPR001005SANT/Myb domain
CDDcd001675.98E-101661No hitNo description
PROSITE profilePS5129426.57262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2463117IPR009057Homeodomain-like
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
CDDcd001673.42E-1171112No hitNo description
PfamPF002491.2E-1472111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDRKLVNFIV THGQCCWRSL PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NQDEEQLVID LHARLGNRWS KIAARFPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHEPLQ KPDTQHEPSY SHGANDYHPN LDKNQLELPK ICANVSSTAA DVLRTSSETG  180
SDEDPLMNLI WSDAFLNDLS WNLTGLDSWE ECSEVGLFSS ELLENGNAID GYHSFGFGGF  240
TEIDFNSLDM GAKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484335.10.0PREDICTED: protein ODORANT1-like
SwissprotQ50EX61e-85ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0D2RR780.0A0A0D2RR78_GOSRA; Uncharacterized protein
STRINGGorai.006G064000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-85myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]