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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.006G061600.1 |
Common Name | B456_006G061600, LOC105798681 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
CO-like |
Protein Properties |
Length: 415aa MW: 46530.5 Da PI: 4.8068 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.006G061600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 28.1 | 4.2e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + +k+++++C ++ +lC+ C ++ H+ Ht+v
Gorai.006G061600.1 16 ARACDGCLRKRARWYCSADDAFLCQGCDTSVHSAnqlasrHTRV 59
578*****************************668899999987 PP
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2 | CCT | 68.5 | 1.8e-23 | 358 | 401 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk+a
Gorai.006G061600.1 358 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRIKGRFVKRA 401
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MISDKRAANA MGGKTARACD GCLRKRARWY CSADDAFLCQ GCDTSVHSAN QLASRHTRVR 60 LETASSRFNA SVINNSATDQ DAPPAWHQGF TRKARTPRQN RSILGQQKSE GKVWDLNPLV 120 PEVGCEDGSA DETEDQLLCR VPVFDPFSAE LRDMVNENGN LVVDGFEDEG TCQLDDGLHG 180 FLPSDLDLAQ FAADVESLLG DGLDENNTCN HTKGTELMDC KQEDESNAFQ ERKIKDEEEE 240 EEGIITACCF DSDFDVTRSS LNWSFDYESP TIGDQEEEEK VVPVAETMDG ENKAEKKRNM 300 LLRLDYESVI TAWATQGSPW TSGTRPEFNP DDFMGSNPKE GIGGICSQGK RNITDGEREA 360 RVSRYREKRR TRLFSKKIRY QVRKLNAEKR PRIKGRFVKR ASFVGGDCFS YYIK*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 368 | 384 | RRTRLFSKKIRYQVRKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX583452 | 3e-62 | JX583452.1 Gossypium hirsutum clone NBRI_GE16495 microsatellite sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 6e-96 | B-box type zinc finger protein with CCT domain |