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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Gorai.006G061200.1 |
Common Name | B456_006G061200, LOC105798678 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
LBD |
Protein Properties |
Length: 240aa MW: 25550.3 Da PI: 8.6828 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.006G061200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 87.1 | 2.3e-27 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+C++C+vlr++C+++C+++p++ +++q++++ +++k++G++ +++l+ a p++ r+ +++sl+yeA+ r+ dP +G+vg++ +++++
Gorai.006G061200.1 4 SCNGCRVLRKGCTESCTIRPCLqwipnAQSQANATLFLAKFYGRAGLINLIGAGPQNLRPGVFKSLLYEACGRIVDPAHGSVGLMCSGNWH 94
6*********************9996656779*********************************************************** PP
DUF260 87 leqlkaelallke 99
l++++++++l ++
Gorai.006G061200.1 95 LCEAAVDAVLNGS 107
*****99988765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCTESCT IRPCLQWIPN AQSQANATLF LAKFYGRAGL INLIGAGPQN 60 LRPGVFKSLL YEACGRIVDP AHGSVGLMCS GNWHLCEAAV DAVLNGSPIK QVPSELSASK 120 CPQLKSSFDI RHVSKDKKSD DGLRKVKSQG RFKRSASKPK PKLEEVVFEP VSKGGDSWEG 180 ECLSVETVEG SLAKGDELGN GSDLELELTL GLEPRTKKRG NNVKGGGDAT CGGRVEGLC*
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